##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane4_Index16_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	18866789	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.960725007313115	33.0	31.0	34.0	30.0	34.0
2	32.10202059290534	33.0	31.0	34.0	30.0	34.0
3	32.17178084728673	34.0	31.0	34.0	30.0	34.0
4	35.662082297098884	37.0	35.0	37.0	33.0	37.0
5	35.64590217233044	37.0	35.0	37.0	33.0	37.0
6	35.60529028018493	37.0	35.0	37.0	33.0	37.0
7	35.624763705154066	37.0	35.0	37.0	33.0	37.0
8	35.60261823037296	37.0	35.0	37.0	33.0	37.0
9	37.249950481769844	39.0	37.0	39.0	33.0	39.0
10-14	37.451357303036566	39.2	37.2	39.4	33.0	39.4
15-19	38.38489800251648	40.0	38.0	41.0	33.2	41.0
20-24	38.17323091915641	40.0	38.0	41.0	33.0	41.0
25-29	37.85438685936436	40.0	37.4	41.0	32.4	41.0
30-34	37.61296160146806	39.8	37.0	41.0	31.8	41.0
35-39	37.62794878344163	40.0	37.0	41.0	31.6	41.0
40-44	37.263231650070395	39.2	36.2	41.0	31.0	41.0
45-49	36.77307260922884	39.0	35.0	40.4	30.2	41.0
50-54	36.414113286579926	38.6	35.0	40.0	30.0	41.0
55-59	36.09228024970226	38.0	34.8	40.0	29.6	41.0
60-64	35.27111361663079	36.8	34.0	39.8	28.2	41.0
65-69	34.35007246861138	35.4	33.2	39.0	27.2	40.8
70-74	33.38072047130012	35.0	32.6	37.4	26.0	39.8
75-79	32.359590929860936	35.0	31.8	36.2	25.0	38.8
80-84	31.26332654698158	34.2	31.0	35.0	22.4	37.0
85-89	30.00341696724334	34.0	30.2	35.0	11.6	36.0
90	28.902560207780986	34.0	30.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	237.0
11	2103.0
12	6559.0
13	13527.0
14	21519.0
15	29959.0
16	37742.0
17	44929.0
18	52236.0
19	59934.0
20	70246.0
21	81737.0
22	94524.0
23	111923.0
24	132436.0
25	158792.0
26	190246.0
27	229448.0
28	278145.0
29	337478.0
30	415392.0
31	515003.0
32	650206.0
33	843907.0
34	1146638.0
35	1651293.0
36	2490236.0
37	3476376.0
38	3743959.0
39	1942928.0
40	37131.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	25.398068531958458	12.034262958047604	9.689873565660802	52.87779494433313
2	21.841406000841417	18.806940688805803	35.77676620569854	23.57488710465424
3	25.55246587927908	21.049295845968157	22.427529010321066	30.970709264431694
4	27.702414630364526	27.392766820611186	19.013636530434287	25.891182018590005
5	29.317132112373034	29.656236684332065	21.431080157702585	19.595551045592316
6	24.336205905436913	32.484191188728154	21.76529265522037	21.41431025061456
7	21.54438620109355	18.704276233443647	37.31269815907351	22.438639406389292
8	21.55338581929161	22.006941429048457	29.144391022421257	27.29528172923868
9	21.579723745516194	20.895387805297347	31.570964860400398	25.95392358878606
10-14	24.58765773895386	26.135778251997028	24.612246243841078	24.664317765208036
15-19	24.963464199548426	25.038421283214934	25.02847492432493	24.969639592911708
20-24	24.71404643532365	25.302249576925966	25.384659354719897	24.59904463303049
25-29	24.576836589425362	25.35101397937103	25.31014555633604	24.76200387486757
30-34	24.619420362925666	25.265642786615423	25.25344837054063	24.86148847991828
35-39	24.623655271090538	25.432141043041035	25.216525826397962	24.72767785947046
40-44	24.589105338497287	25.248568320952053	25.36705480924467	24.79527153130599
45-49	24.53360304531022	25.316894805597386	25.282079011540997	24.867423137551402
50-54	24.560212345265924	25.410382947901127	25.31950010524889	24.709904601584057
55-59	24.58486402115344	25.34122016081698	25.260929447351426	24.812986370678157
60-64	24.50340265628597	25.356243589071937	25.366552805566606	24.77380094907548
65-69	24.52089696921459	25.482398377923808	25.346044047866823	24.65066060499478
70-74	24.59546140947548	25.411752640580847	25.238739472124898	24.754046477818772
75-79	24.594429631669524	25.35172670511374	25.313367130285357	24.74047653293138
80-84	24.532347796441936	25.48885752472027	25.319553138022314	24.659241540815476
85-89	24.636495132311378	25.469024628988336	25.203129608760527	24.69135062993976
90	24.357264889128988	25.567606235219635	25.434617418365324	24.64051145728605
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	78.27586347629159
2	45.416293105495654
3	56.52317514371078
4	53.593596648954524
5	48.912683157965354
6	45.750516156051475
7	43.98302560748284
8	48.84866754853029
9	47.53364733430225
10-14	49.25197550416189
15-19	49.93310379246014
20-24	49.31309106835414
25-29	49.33884046429293
30-34	49.480908842843945
35-39	49.351333130560995
40-44	49.384376869803276
45-49	49.40102618286162
50-54	49.27011694684998
55-59	49.3978503918316
60-64	49.27720360536145
65-69	49.171557574209366
70-74	49.34950788729425
75-79	49.3349061646009
80-84	49.19158933725741
85-89	49.32784576225114
90	48.99777634641504
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	16.0
1	11.0
2	6.0
3	6.0
4	7.5
5	9.0
6	12.5
7	21.0
8	27.0
9	45.0
10	62.0
11	86.5
12	146.0
13	245.0
14	417.5
15	652.5
16	1088.5
17	1909.5
18	3300.0
19	5894.5
20	7610.0
21	10314.5
22	17323.0
23	27804.5
24	41583.5
25	60073.5
26	83778.0
27	112855.5
28	143964.0
29	176570.0
30	194329.0
31	211521.0
32	247162.5
33	287088.5
34	330136.5
35	371252.5
36	413728.5
37	462818.5
38	505621.5
39	540956.5
40	559647.0
41	571116.5
42	594724.0
43	617297.5
44	633239.0
45	642505.0
46	645033.0
47	642253.0
48	641055.5
49	642247.5
50	643089.0
51	635659.0
52	627311.5
53	617131.0
54	611346.0
55	612005.0
56	602688.0
57	587500.0
58	568695.5
59	546118.0
60	533655.0
61	518601.5
62	489075.0
63	452520.0
64	407346.5
65	364024.5
66	320138.0
67	273324.0
68	229414.5
69	188069.5
70	167476.0
71	149525.0
72	116141.5
73	88025.5
74	63952.0
75	43658.5
76	28693.0
77	17967.0
78	10276.0
79	5256.0
80	3263.0
81	2417.5
82	1125.0
83	479.5
84	199.0
85	82.5
86	41.5
87	27.5
88	13.5
89	6.5
90	6.0
91	5.5
92	3.5
93	1.0
94	1.0
95	1.5
96	2.0
97	2.5
98	1.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.017496352983011578
3	0.038204699273416375
4	0.047241743149827986
5	0.05180531779944112
6	0.00469608262434058
7	0.02007230801171307
8	0.015635941017838276
9	0.013335602576569867
10-14	0.018567017418809315
15-19	0.008448708468621767
20-24	0.004366402783218702
25-29	0.0020639442143546524
30-34	0.004118347854528929
35-39	0.001642038822822474
40-44	8.756126969989434E-4
45-49	0.003385843770235624
50-54	4.3250602951037405E-4
55-59	0.0031653505002891594
60-64	9.317960782833793E-4
65-69	0.004212693532534869
70-74	0.004379123548792537
75-79	0.008567435613977556
80-84	0.006578755929268091
85-89	0.006483350187464332
90	0.002867472573101867
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	1.8866789E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	53.095803642121936
#Duplication Level	Relative count
1	100.0
2	30.727600106398217
3	15.830826836903812
4	9.848996378368424
5	6.515867656988521
6	4.749043439117713
7	3.713706954760297
8	3.0047265361242403
9	2.399075153970495
10++	27.82211036768768
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	4914085	3.029893	4.7548738	2
GAAGA	3955925	2.548608	5.000464	2
CCAGG	3919630	2.5383978	5.186047	1
CTTCT	4127890	2.5161757	5.6086206	1
CCTGG	3891255	2.5060737	5.9427032	1
CTGGA	3737000	2.4004762	8.89283	1
CTGCT	3731080	2.337723	5.206343	1
TCCAG	3681405	2.3194366	5.7379045	2
CTCCT	3702455	2.275322	7.7259064	1
CTGGG	3431875	2.253414	8.452211	1
CAGGA	3423085	2.2110698	5.508483	1
CTTCA	3571700	2.1892645	5.8491783	1
CTCCA	3488175	2.1555684	8.341733	1
CCCAG	3388210	2.1521847	7.3587847	1
CAGAA	3312955	2.0934622	5.1069946	1
CTCTG	3194255	2.001373	6.4441895	1
CTGGC	2893985	1.8638048	5.567891	1
TGGAA	2884750	1.8482157	5.210347	2
CTGAA	2930335	1.841435	5.591223	1
CTCAG	2738855	1.7255913	6.3014627	1
CTTTG	2733350	1.6986871	5.041107	1
CTGGT	2562190	1.6367229	5.1668544	1
CTTGG	2556230	1.6329159	5.3968406	1
CTCCC	2490785	1.5432262	5.0937114	1
>>END_MODULE
